Variant report

Variant	rs7457422
Chromosome Location	chr7:116903530-116903531
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10226864	0.86[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap]
rs10235236	0.86[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap]
rs10245615	0.92[CHB][hapmap];0.95[JPT][hapmap]
rs10255896	0.86[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap]
rs10256129	0.86[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap]
rs10280067	0.86[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap]
rs11981089	0.92[CHB][hapmap];0.95[JPT][hapmap]
rs1468655	0.86[CEU][hapmap]
rs6466605	0.92[CHB][hapmap];0.95[JPT][hapmap]
rs6466606	0.86[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap]
rs6466607	0.86[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap]
rs6942558	0.93[CHB][hapmap];0.95[JPT][hapmap]
rs6958283	0.91[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap]
rs6965467	0.86[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs6974937	0.86[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap]
rs7776963	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116900600-116903600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:116900800-116904600	Weak transcription	NHDF-Ad	bronchial
3	chr7:116902200-116904000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr7:116902200-116904000	Enhancers	NHEK	skin
5	chr7:116902800-116903600	Enhancers	HMEC	breast
6	chr7:116902800-116904400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:116903200-116904200	Enhancers	HUVEC	blood vessel
8	chr7:116903400-116904200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr7:116903400-116909200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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