Variant report

Variant	rs10245615
Chromosome Location	chr7:116897047-116897048
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10226864	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10235236	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10255896	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10256129	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10280067	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11981089	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12706145	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap]
rs4730775	0.96[CEU][hapmap]
rs6466605	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6466606	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6466607	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6942558	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6946781	0.92[CHB][hapmap]
rs6951125	0.96[CEU][hapmap]
rs6958283	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6965467	0.85[JPT][hapmap]
rs6974937	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7457422	0.92[CHB][hapmap];0.95[JPT][hapmap]
rs7776963	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116892600-116899000	Weak transcription	NHDF-Ad	bronchial
2	chr7:116892800-116898800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:116896200-116897600	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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