Variant report

Variant	rs6951125
Chromosome Location	chr7:116914043-116914044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	7:115890993-115892266..7:116894301-116914960	GM12878	blood:
2	chr7:116913347..116915361-chr7:116918584..116921190,2	K562	blood:
3	7:116754962-116765597..7:116894301-116914960	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000135269	Chromatin interaction
ENSG00000004866	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10226248	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10245615	0.96[CEU][hapmap]
rs11981089	0.92[CEU][hapmap];0.87[CHD][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12706145	0.96[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.88[JPT][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13224335	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13227482	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2215552	0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2402177	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34911130	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3735646	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs38902	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs38909	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs38916	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4727845	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730773	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4730775	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6950776	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs887573	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs887575	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9691008	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9692365	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116909600-116920400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:116910800-116915000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:116911200-116915000	Weak transcription	NHLF	lung
4	chr7:116912000-116915000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:116912200-116915200	Weak transcription	Osteobl	bone
6	chr7:116912400-116914800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:116913000-116915000	Weak transcription	NHDF-Ad	bronchial
8	chr7:116913200-116915200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:116913200-116915200	Enhancers	HMEC	breast
10	chr7:116913400-116914400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr7:116913600-116915200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:116913600-116915400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:116913800-116914200	Flanking Active TSS	NHEK	skin
14	chr7:116913800-116915000	Weak transcription	Fetal Lung	lung
15	chr7:116914000-116914600	Enhancers	Fetal Kidney	kidney
16	chr7:116914000-116914600	Enhancers	Placenta	Placenta

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