Variant report

Variant	rs887575
Chromosome Location	chr7:116916228-116916229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10226248	0.91[ASN][1000 genomes]
rs12706145	0.84[CHD][hapmap];0.86[GIH][hapmap]
rs13227482	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2215552	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2402177	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3735646	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4727845	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4730775	0.87[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs6950776	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6951125	0.87[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs887573	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116909600-116920400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:116914600-116918000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:116914600-116918200	Weak transcription	Placenta	Placenta
4	chr7:116915000-116919600	Strong transcription	Fetal Lung	lung
5	chr7:116915400-116917400	Weak transcription	NHDF-Ad	bronchial
6	chr7:116915400-116918200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:116915400-116920000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:116915400-116920000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:116915400-116920000	Weak transcription	NHLF	lung
10	chr7:116915600-116917400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:116915800-116920000	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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