Variant report

Variant	rs2402177
Chromosome Location	chr7:116915119-116915120
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10226248	0.92[ASN][1000 genomes]
rs12706145	0.84[CHD][hapmap];0.89[GIH][hapmap];0.80[ASN][1000 genomes]
rs13227482	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2215552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3735646	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4727845	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4730773	0.80[ASN][1000 genomes]
rs4730775	0.87[CHD][hapmap];0.94[GIH][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs6950776	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6951125	0.86[CHD][hapmap];0.94[GIH][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs887573	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs887575	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9691008	0.80[ASN][1000 genomes]
rs9692365	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116909600-116920400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:116912200-116915200	Weak transcription	Osteobl	bone
3	chr7:116913200-116915200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:116913200-116915200	Enhancers	HMEC	breast
5	chr7:116913600-116915200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:116913600-116915400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:116914200-116915200	Enhancers	NHEK	skin
8	chr7:116914400-116915400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr7:116914600-116918000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:116914600-116918200	Weak transcription	Placenta	Placenta
11	chr7:116914800-116915600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:116915000-116915400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:116915000-116915400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:116915000-116915400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:116915000-116915400	Enhancers	NHDF-Ad	bronchial
16	chr7:116915000-116915400	Enhancers	NHLF	lung
17	chr7:116915000-116919600	Strong transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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