Variant report

Variant	rs10254103
Chromosome Location	chr7:116890260-116890261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116696376..116698519-chr7:116888439..116890411,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10226864	1.00[CEU][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10235236	1.00[CEU][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10245615	0.85[JPT][hapmap]
rs10255896	1.00[CEU][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10256129	1.00[CEU][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10271623	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10280067	1.00[CEU][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10953839	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11760825	0.83[ASN][1000 genomes]
rs11981089	0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs13224335	0.85[ASN][1000 genomes]
rs1468655	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1860698	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs38902	0.85[ASN][1000 genomes]
rs38909	0.85[ASN][1000 genomes]
rs38916	0.84[ASN][1000 genomes]
rs6466605	0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs6466606	1.00[CEU][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6466607	1.00[CEU][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6942558	0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs6946781	0.80[EUR][1000 genomes]
rs6947786	0.86[ASN][1000 genomes]
rs6958283	0.95[CEU][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6965467	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6968768	0.86[ASN][1000 genomes]
rs6974937	1.00[CEU][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6975501	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6979800	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs718738	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs739693	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7457422	0.86[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7776963	1.00[CEU][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7802930	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv516761	chr7:116888161-116892846	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116888000-116892400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:116888800-116891200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:116888800-116892600	Enhancers	NHDF-Ad	bronchial
4	chr7:116888800-116892600	Enhancers	Osteobl	bone
5	chr7:116889200-116890800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:116889400-116890600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr7:116889400-116892600	Enhancers	GM12878-XiMat	blood
8	chr7:116889600-116890600	Weak transcription	Placenta	Placenta
9	chr7:116889800-116891000	Weak transcription	NHLF	lung
10	chr7:116889800-116892400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:116890200-116890400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:116890200-116891200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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