Variant report

Variant	rs13248054
Chromosome Location	chr8:104926077-104926078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10091544	0.87[EUR][1000 genomes]
rs10112626	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1027459	0.82[ASN][1000 genomes]
rs12675809	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13273017	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1496853	0.82[ASN][1000 genomes]
rs1603495	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1603496	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17816262	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1845928	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1851150	0.83[ASN][1000 genomes]
rs1851152	0.82[ASN][1000 genomes]
rs1949617	0.82[ASN][1000 genomes]
rs1954900	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1954901	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1954905	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2023029	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2935299	0.84[ASN][1000 genomes]
rs3104252	0.82[ASN][1000 genomes]
rs3107466	0.82[ASN][1000 genomes]
rs3110468	0.82[ASN][1000 genomes]
rs4386947	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4463386	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4549737	0.83[EUR][1000 genomes]
rs4734735	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4734737	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55959188	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57773033	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6468895	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6468896	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6468897	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6468899	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6468900	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6983436	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6986875	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6988613	0.85[ASN][1000 genomes]
rs6993567	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7014986	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7357535	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7357566	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7462119	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7815854	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7830448	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7837318	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752692	chr8:104520824-105123824	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1016387	chr8:104578389-104931853	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
4	nsv831415	chr8:104907757-105115320	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104899400-104933400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:104919600-104938600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:104924200-104938600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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