Variant report

Variant	rs4734737
Chromosome Location	chr8:104951615-104951616
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10091544	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10112626	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12675809	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13248054	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13257910	0.85[EUR][1000 genomes]
rs13273017	1.00[CEU][hapmap];0.88[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1603495	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17816262	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1845928	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1954900	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1954901	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1954905	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2023029	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3107472	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs4386947	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4463386	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4467913	0.89[EUR][1000 genomes]
rs4549737	0.84[EUR][1000 genomes]
rs4618663	0.89[EUR][1000 genomes]
rs4734735	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734742	0.88[EUR][1000 genomes]
rs55959188	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57773033	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62527146	0.87[EUR][1000 genomes]
rs6468895	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6468896	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6468897	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6468899	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6468900	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6983436	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6986875	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988613	0.91[CEU][hapmap];0.83[JPT][hapmap]
rs6993567	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7014986	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7357535	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7357566	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7815854	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7830448	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7837318	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9692610	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752692	chr8:104520824-105123824	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv831415	chr8:104907757-105115320	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104939000-104955200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:104939400-104959600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr8:104948200-104965200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr8:104948600-104953800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:104948800-104952600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:104949400-104952600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
7	chr8:104949400-104952600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
8	chr8:104949600-104952800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:104949800-104952000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:104950000-104952200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
11	chr8:104950200-104952400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
12	chr8:104950400-104951800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
13	chr8:104950800-104952400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
14	chr8:104951200-104951800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
15	chr8:104951200-104959600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr8:104951400-104951800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr8:104951400-104952200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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