Variant report

Variant	rs1845928
Chromosome Location	chr8:104908099-104908100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10091544	0.87[EUR][1000 genomes]
rs10112626	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1027459	0.82[ASN][1000 genomes]
rs12675809	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13248054	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13273017	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1496853	0.82[ASN][1000 genomes]
rs1603495	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1603496	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17816262	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1851150	0.83[ASN][1000 genomes]
rs1851152	0.82[ASN][1000 genomes]
rs1949617	0.82[ASN][1000 genomes]
rs1954900	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1954901	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1954905	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2023029	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2935299	0.84[ASN][1000 genomes]
rs3104252	0.82[ASN][1000 genomes]
rs3107466	0.82[ASN][1000 genomes]
rs3107472	0.80[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs3110468	0.82[ASN][1000 genomes]
rs4386947	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4463386	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4549737	0.83[EUR][1000 genomes]
rs4734735	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4734737	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55959188	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57773033	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6468895	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6468896	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6468897	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6468899	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6468900	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6983436	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6986875	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6988613	0.87[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[YRI][hapmap];0.85[ASN][1000 genomes]
rs6993567	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7014986	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7357535	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7357566	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7462119	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7815854	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7830448	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7837318	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020476	chr8:104312212-104924482	Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv539704	chr8:104312212-104924482	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv2752692	chr8:104520824-105123824	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1016387	chr8:104578389-104931853	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	esv1841024	chr8:104872512-104908099	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3479715	chr8:104906252-104912803	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3479717	chr8:104906257-104912822	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv3479716	chr8:104906319-104912742	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3423636	chr8:104906321-104912711	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3479719	chr8:104906382-104912703	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv12257	chr8:104906431-104912684	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	nsv831415	chr8:104907757-105115320	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104897200-104914200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr8:104898200-104919000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:104899400-104933400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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