Variant report

Variant	rs13249979
Chromosome Location	chr8:59952662-59952663
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs10504279	0.86[ASN][1000 genomes]
rs10504280	0.86[ASN][1000 genomes]
rs10504281	0.86[ASN][1000 genomes]
rs10504282	0.86[ASN][1000 genomes]
rs13258653	0.86[ASN][1000 genomes]
rs16924532	0.86[ASN][1000 genomes]
rs17244540	0.86[ASN][1000 genomes]
rs34975569	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35611978	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36068531	0.86[ASN][1000 genomes]
rs7813268	0.86[ASN][1000 genomes]

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59932000-59955600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr8:59942200-59953400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr8:59946200-59953200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr8:59946400-59953200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:59946400-59956400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr8:59946600-59953200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr8:59946600-59962400	Weak transcription	Fetal Stomach	stomach
8	chr8:59946800-59953200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:59947000-59956000	Weak transcription	Primary T cells from cord blood	blood
10	chr8:59947200-59956200	Weak transcription	Thymus	Thymus
11	chr8:59947200-59958400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:59947400-59955600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr8:59947600-59953000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr8:59947600-59953000	Weak transcription	Pancreas	Pancrea
15	chr8:59947600-59953200	Weak transcription	Fetal Thymus	thymus
16	chr8:59947600-59956000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr8:59948000-59953400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr8:59948200-59953000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr8:59948600-59953800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr8:59948800-59953200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr8:59948800-59953200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:59948800-59953200	Weak transcription	NHDF-Ad	bronchial
23	chr8:59949200-59971000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr8:59950400-59953000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr8:59950600-59953000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr8:59951000-59953400	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr8:59951200-59954200	Strong transcription	Dnd41	blood
28	chr8:59951200-59956400	Weak transcription	Colon Smooth Muscle	Colon
29	chr8:59951200-59957800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr8:59951400-59953400	Weak transcription	Fetal Intestine Small	intestine
31	chr8:59951400-59955600	Weak transcription	Osteobl	bone
32	chr8:59951400-59960600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr8:59951600-59953000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr8:59951600-59953200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr8:59951600-59956200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr8:59951800-59953000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr8:59951800-59953000	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr8:59951800-59956200	Weak transcription	Small Intestine	intestine
39	chr8:59952000-59953200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr8:59952000-59954800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr8:59952200-59953200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr8:59952200-59953400	Weak transcription	Fetal Brain Male	brain
43	chr8:59952400-59952800	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr8:59952400-59952800	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr8:59952400-59952800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr8:59952400-59952800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr8:59952400-59952800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr8:59952400-59956200	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr8:59952600-59953000	Weak transcription	Brain Germinal Matrix	brain

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