Variant report

Variant	rs10504282
Chromosome Location	chr8:59970337-59970338
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10504279	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504281	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13249979	0.86[ASN][1000 genomes]
rs13258653	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924532	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17244540	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.88[MEX][hapmap];0.87[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34975569	0.93[ASN][1000 genomes]
rs35611978	0.93[ASN][1000 genomes]
rs36068531	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7813268	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9694192	0.84[GIH][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10504282	LYN	cis	parietal	SCAN

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59949200-59971000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:59957800-59989800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr8:59958600-59971000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:59962800-59970800	Weak transcription	Fetal Stomach	stomach
5	chr8:59963600-59971000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr8:59965200-59971400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:59965800-59973000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:59966000-59970800	Weak transcription	Gastric	stomach
9	chr8:59967600-59971600	Enhancers	Fetal Thymus	thymus
10	chr8:59967800-59971400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr8:59968000-59971000	Weak transcription	Left Ventricle	heart
12	chr8:59968000-59971400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:59968000-59973400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr8:59968000-59973600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr8:59968000-59976600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr8:59968200-59970800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr8:59968200-59971000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr8:59968200-59971000	Weak transcription	Small Intestine	intestine
19	chr8:59968200-59971200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:59968200-59972800	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr8:59968200-59973400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr8:59968200-59975600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr8:59968200-59976400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr8:59968400-59971000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr8:59968400-59971000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr8:59968400-59971200	Weak transcription	NHDF-Ad	bronchial
27	chr8:59968400-59972400	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr8:59968600-59981200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr8:59968800-59970800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr8:59968800-59974200	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr8:59969400-59970600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr8:59969400-59971000	Weak transcription	Pancreas	Pancrea
33	chr8:59969600-59970800	Weak transcription	Colon Smooth Muscle	Colon
34	chr8:59969600-59970800	Weak transcription	Fetal Heart	heart
35	chr8:59969600-59970800	Weak transcription	Thymus	Thymus
36	chr8:59969600-59975400	Enhancers	Dnd41	blood
37	chr8:59969600-59979400	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr8:59969600-59995400	Weak transcription	Osteobl	bone
39	chr8:59969800-59970800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr8:59969800-59972400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr8:59970000-59970600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr8:59970000-59970800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr8:59970000-59971000	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr8:59970000-59971200	Weak transcription	Primary T cells from cord blood	blood
45	chr8:59970000-59971200	Weak transcription	Duodenum Mucosa	Duodenum
46	chr8:59970000-59971600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr8:59970000-59976400	Weak transcription	Primary hematopoietic stem cells	blood
48	chr8:59970200-59970600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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