Variant report

Variant	rs9694192
Chromosome Location	chr8:59944515-59944516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59932710..59934349-chr8:59943297..59945078,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10504279	0.84[GIH][hapmap]
rs10504280	0.84[GIH][hapmap]
rs10504281	0.84[GIH][hapmap]
rs10504282	0.84[GIH][hapmap]
rs13250497	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13268134	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13275234	0.80[JPT][hapmap]
rs13277511	0.82[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34350679	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34619285	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35002097	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9694192	LYN	cis	parietal	SCAN

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59929800-59945000	Weak transcription	Fetal Stomach	stomach
2	chr8:59931400-59945600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:59932000-59955600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr8:59933600-59950800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr8:59934000-59945800	Weak transcription	Osteobl	bone
6	chr8:59935200-59945800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:59936800-59944600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr8:59938400-59944600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr8:59938600-59945000	Weak transcription	Thymus	Thymus
10	chr8:59940400-59945800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr8:59940600-59948400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr8:59942200-59953400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr8:59942400-59946200	Weak transcription	Small Intestine	intestine
14	chr8:59942600-59945600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr8:59943000-59944800	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr8:59943000-59947000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr8:59943200-59945000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr8:59943200-59945600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr8:59943200-59945600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr8:59943200-59945600	Weak transcription	Dnd41	blood
21	chr8:59943400-59945200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr8:59943400-59945800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr8:59943400-59946200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr8:59943400-59950800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr8:59943400-59951200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:59943600-59946200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr8:59943800-59945200	Strong transcription	Fetal Thymus	thymus
28	chr8:59943800-59946000	Weak transcription	Liver	Liver
29	chr8:59943800-59950400	Weak transcription	Colon Smooth Muscle	Colon
30	chr8:59944000-59947600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr8:59944000-59951400	Weak transcription	Brain Germinal Matrix	brain
32	chr8:59944400-59945600	Strong transcription	Primary T cells from cord blood	blood

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