Variant report

Variant	rs10504279
Chromosome Location	chr8:59964372-59964373
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10504280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504281	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504282	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13249979	0.86[ASN][1000 genomes]
rs13258653	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924532	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17244540	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.88[MEX][hapmap];0.87[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34975569	0.93[ASN][1000 genomes]
rs35611978	0.93[ASN][1000 genomes]
rs36068531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7813268	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9694192	0.84[GIH][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10504279	LYN	cis	parietal	SCAN

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59949200-59971000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:59956600-59965800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:59957000-59966800	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr8:59957000-59967600	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr8:59957200-59967600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:59957800-59989800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr8:59958600-59967000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr8:59958600-59971000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:59958800-59966800	Weak transcription	Thymus	Thymus
10	chr8:59958800-59967800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:59958800-59967800	Weak transcription	Small Intestine	intestine
12	chr8:59961200-59967600	Weak transcription	Fetal Thymus	thymus
13	chr8:59962000-59965000	Enhancers	Primary T cells from cord blood	blood
14	chr8:59962200-59965200	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr8:59962400-59965000	Enhancers	Rectal Smooth Muscle	rectum
16	chr8:59962600-59966800	Enhancers	Dnd41	blood
17	chr8:59962800-59965000	Enhancers	Colon Smooth Muscle	Colon
18	chr8:59962800-59965800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr8:59962800-59965800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr8:59962800-59965800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:59962800-59966000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr8:59962800-59970800	Weak transcription	Fetal Stomach	stomach
23	chr8:59963000-59965400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr8:59963000-59965400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr8:59963000-59965800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:59963000-59966000	Weak transcription	Fetal Heart	heart
27	chr8:59963000-59967800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr8:59963000-59968000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr8:59963400-59966800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr8:59963400-59967600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr8:59963400-59969400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr8:59963600-59965200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr8:59963600-59965800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr8:59963600-59965800	Weak transcription	NHDF-Ad	bronchial
35	chr8:59963600-59971000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr8:59963800-59965800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr8:59963800-59965800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr8:59963800-59965800	Weak transcription	Osteobl	bone
39	chr8:59964000-59966000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr8:59964000-59966800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr8:59964200-59966200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr8:59964200-59966600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr8:59964200-59966800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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