Variant report

Variant	rs13275234
Chromosome Location	chr8:59934277-59934278
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:59720293..59721112-chr8:59933503..59934491,4	MCF-7	breast:
2	chr8:59932710..59934349-chr8:59943297..59945078,2	K562	blood:
3	chr8:59720207..59721110-chr8:59933598..59934423,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10504270	0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes]
rs11987778	0.85[CHD][hapmap]
rs13256423	1.00[CEU][hapmap]
rs13261062	1.00[CEU][hapmap]
rs13268134	0.80[JPT][hapmap]
rs13272611	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924196	1.00[CEU][hapmap]
rs16924215	1.00[ASW][hapmap];1.00[CEU][hapmap]
rs16924281	1.00[CEU][hapmap]
rs16924312	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap]
rs16924325	0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs16924370	0.85[CEU][hapmap];0.80[ASN][1000 genomes]
rs16924532	1.00[MEX][hapmap]
rs1868347	0.87[ASN][1000 genomes]
rs59506150	0.82[ASN][1000 genomes]
rs746867	0.84[CHD][hapmap]
rs7838084	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9694192	0.80[JPT][hapmap]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59921400-59942200	Weak transcription	Gastric	stomach
2	chr8:59928400-59934800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:59928600-59941200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr8:59928600-59941800	Weak transcription	HUVEC	blood vessel
5	chr8:59929800-59939600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:59929800-59945000	Weak transcription	Fetal Stomach	stomach
7	chr8:59930200-59934400	Enhancers	Primary hematopoietic stem cells	blood
8	chr8:59930200-59939600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr8:59930200-59939600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr8:59931000-59934600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:59931000-59938200	Enhancers	Primary T cells from cord blood	blood
12	chr8:59931200-59935000	Weak transcription	GM12878-XiMat	blood
13	chr8:59931200-59941800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr8:59931400-59938000	Enhancers	Dnd41	blood
15	chr8:59931400-59945600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr8:59932000-59935000	Weak transcription	Brain Germinal Matrix	brain
17	chr8:59932000-59955600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr8:59932800-59935600	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr8:59933200-59934800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr8:59933200-59935000	Weak transcription	Thymus	Thymus
21	chr8:59933600-59942000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr8:59933600-59950800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr8:59933800-59940800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr8:59933800-59941400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr8:59933800-59941400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr8:59933800-59941800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr8:59934000-59934400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr8:59934000-59934800	Weak transcription	Small Intestine	intestine
29	chr8:59934000-59935400	Weak transcription	Fetal Thymus	thymus
30	chr8:59934000-59936000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr8:59934000-59936000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr8:59934000-59941200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr8:59934000-59942600	Weak transcription	Colon Smooth Muscle	Colon
34	chr8:59934000-59945800	Weak transcription	Osteobl	bone
35	chr8:59934200-59934600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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