Variant report

Variant	rs16924281
Chromosome Location	chr8:59845715-59845716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10504270	0.85[CEU][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13256423	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13261062	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13261596	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13275234	1.00[CEU][hapmap]
rs13282142	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13282292	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16924196	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16924215	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16924312	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16924325	0.85[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16924370	0.87[CEU][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1868347	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34677816	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35054015	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59506150	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71521433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71521435	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71521439	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr8:59811600-59849000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr8:59811800-59848800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:59817000-59847000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr8:59823800-59846400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:59824200-59849600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr8:59831200-59860200	Weak transcription	Gastric	stomach
9	chr8:59834000-59860400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:59834400-59850800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr8:59835800-59851400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:59837200-59858200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr8:59837800-59845800	Weak transcription	HUVEC	blood vessel
14	chr8:59839000-59860000	Weak transcription	Fetal Intestine Large	intestine
15	chr8:59839400-59851400	Weak transcription	Fetal Brain Female	brain
16	chr8:59839600-59857600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:59840000-59849600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr8:59840000-59854000	Strong transcription	Dnd41	blood
19	chr8:59840200-59848200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr8:59840400-59850400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr8:59840400-59850400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr8:59840600-59849000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr8:59840800-59850200	Weak transcription	Fetal Stomach	stomach
24	chr8:59840800-59850400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr8:59841000-59845800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr8:59841000-59848200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr8:59841000-59848400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr8:59841000-59848800	Weak transcription	Thymus	Thymus
29	chr8:59841000-59858000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr8:59841000-59859000	Weak transcription	Fetal Intestine Small	intestine
31	chr8:59841000-59861800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr8:59842400-59851400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr8:59843000-59852600	Strong transcription	Primary T cells from cord blood	blood
34	chr8:59843400-59846400	Weak transcription	Small Intestine	intestine
35	chr8:59843800-59845800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr8:59843800-59863600	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr8:59844400-59851200	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr8:59844600-59853400	Strong transcription	Fetal Thymus	thymus
39	chr8:59845200-59847600	Enhancers	Osteobl	bone
40	chr8:59845200-59851600	Weak transcription	Colon Smooth Muscle	Colon
41	chr8:59845600-59846600	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr8:59845600-59847000	Enhancers	Muscle Satellite Cultured Cells	--

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