Variant report

Variant	rs34677816
Chromosome Location	chr8:59885779-59885780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59884254..59886843-chr8:59905143..59907146,2	K562	blood:

Variant related genes	Relation type
ENSG00000254048	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10504270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13261596	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13282142	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13282292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16924281	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16924312	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16924325	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16924370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1868347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59506150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71521433	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71521435	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs71521439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7838084	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59852600-59888600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr8:59870200-59886600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:59872400-59887600	Weak transcription	Colon Smooth Muscle	Colon
4	chr8:59872800-59889200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr8:59873600-59887600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:59873600-59893200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr8:59874800-59887600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:59876400-59886200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr8:59876400-59886400	Weak transcription	Thymus	Thymus
10	chr8:59877200-59887600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr8:59877600-59887600	Weak transcription	Gastric	stomach
12	chr8:59879000-59887600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr8:59879000-59887800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr8:59879000-59887800	Weak transcription	Dnd41	blood
15	chr8:59879200-59886600	Weak transcription	Osteobl	bone
16	chr8:59879200-59887600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr8:59879200-59887600	Weak transcription	Fetal Stomach	stomach
18	chr8:59880400-59886400	Weak transcription	Fetal Thymus	thymus
19	chr8:59880600-59887600	Weak transcription	Pancreas	Pancrea
20	chr8:59882400-59885800	Weak transcription	Primary T cells from cord blood	blood
21	chr8:59882600-59886000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr8:59884000-59886200	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr8:59884000-59887600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr8:59884800-59887200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr8:59885200-59886000	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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