Variant report

Variant	rs16924325
Chromosome Location	chr8:59869732-59869733
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10094267	0.84[CHD][hapmap]
rs10504270	0.82[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13256423	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs13261062	0.85[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs13261596	0.88[ASN][1000 genomes]
rs13275234	0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs13282142	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13282292	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13282806	0.83[CHD][hapmap]
rs16918754	0.87[CHD][hapmap]
rs16924196	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs16924215	0.85[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs16924281	0.85[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16924312	1.00[ASW][hapmap];0.85[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16924370	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16924532	1.00[MEX][hapmap]
rs1868347	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34677816	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35054015	0.83[ASN][1000 genomes]
rs4237029	0.84[CHD][hapmap]
rs59506150	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71521433	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs71521435	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs71521439	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7838084	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59851400-59878600	Weak transcription	Aorta	Aorta
2	chr8:59852000-59871200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr8:59852000-59875200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:59852000-59883400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr8:59852200-59871800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr8:59852200-59874200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr8:59852400-59875000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:59852400-59875600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr8:59852600-59888600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr8:59858200-59870400	Weak transcription	Brain Germinal Matrix	brain
11	chr8:59858200-59872600	Weak transcription	Fetal Kidney	kidney
12	chr8:59859200-59870800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:59860400-59871200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr8:59861200-59870800	Weak transcription	Fetal Stomach	stomach
15	chr8:59864600-59870200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr8:59865000-59871200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr8:59865400-59871800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr8:59866200-59869800	Weak transcription	Fetal Lung	lung
19	chr8:59866200-59871000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr8:59866400-59870000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:59866400-59871200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:59866800-59869800	Weak transcription	Osteobl	bone
23	chr8:59866800-59870600	Weak transcription	Fetal Brain Female	brain
24	chr8:59867200-59871200	Weak transcription	Pancreas	Pancrea
25	chr8:59867200-59878600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr8:59867400-59872000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr8:59867600-59870600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr8:59868000-59869800	Weak transcription	Duodenum Mucosa	Duodenum
29	chr8:59868000-59872000	Weak transcription	Small Intestine	intestine
30	chr8:59868000-59875200	Weak transcription	Thymus	Thymus
31	chr8:59868000-59880000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr8:59868200-59871000	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr8:59868200-59881200	Weak transcription	Primary T cells from cord blood	blood
34	chr8:59869000-59871200	Weak transcription	Stomach Mucosa	stomach
35	chr8:59869200-59872800	Strong transcription	Fetal Thymus	thymus
36	chr8:59869400-59869800	Enhancers	Gastric	stomach
37	chr8:59869400-59871600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr8:59869400-59871600	Strong transcription	Dnd41	blood
39	chr8:59869400-59871800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr8:59869400-59872400	Enhancers	Fetal Brain Male	brain
41	chr8:59869400-59874000	Enhancers	NHDF-Ad	bronchial
42	chr8:59869600-59870200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr8:59869600-59870200	Enhancers	Colon Smooth Muscle	Colon
44	chr8:59869600-59871800	Enhancers	NHLF	lung

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