Variant report

Variant	rs16924312
Chromosome Location	chr8:59851636-59851637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10504270	0.82[ASW][hapmap];0.85[CEU][hapmap];0.82[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13256423	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13261062	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs13261596	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13275234	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap]
rs13282142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13282292	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13282806	0.87[LWK][hapmap]
rs16918754	0.82[CHD][hapmap]
rs16924196	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16924215	1.00[CEU][hapmap];0.87[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs16924281	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16924325	1.00[ASW][hapmap];0.85[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16924370	0.87[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16924532	1.00[MEX][hapmap]
rs1868347	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34677816	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35054015	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59506150	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71521433	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71521435	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71521439	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7838084	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr8:59831200-59860200	Weak transcription	Gastric	stomach
3	chr8:59834000-59860400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:59837200-59858200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr8:59839000-59860000	Weak transcription	Fetal Intestine Large	intestine
6	chr8:59839600-59857600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:59840000-59854000	Strong transcription	Dnd41	blood
8	chr8:59841000-59858000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:59841000-59859000	Weak transcription	Fetal Intestine Small	intestine
10	chr8:59841000-59861800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr8:59843000-59852600	Strong transcription	Primary T cells from cord blood	blood
12	chr8:59843800-59863600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr8:59844600-59853400	Strong transcription	Fetal Thymus	thymus
14	chr8:59847000-59857800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr8:59847200-59856000	Weak transcription	NHDF-Ad	bronchial
16	chr8:59847400-59853000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:59847400-59858000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:59847600-59857400	Weak transcription	HUVEC	blood vessel
19	chr8:59847600-59860400	Weak transcription	Small Intestine	intestine
20	chr8:59847800-59860600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr8:59848200-59851800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr8:59848400-59852200	Strong transcription	Osteobl	bone
23	chr8:59848400-59852400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr8:59848800-59852200	Strong transcription	Thymus	Thymus
25	chr8:59848800-59852600	Strong transcription	Primary hematopoietic stem cells	blood
26	chr8:59849000-59852400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr8:59849000-59858000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr8:59849000-59861000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr8:59849600-59852000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr8:59849800-59852200	Strong transcription	Stomach Smooth Muscle	stomach
31	chr8:59849800-59857800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr8:59850000-59852200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr8:59850000-59852400	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr8:59850000-59858000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr8:59850200-59852400	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr8:59850400-59851800	Weak transcription	Fetal Stomach	stomach
37	chr8:59850400-59852200	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr8:59850400-59852200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr8:59850400-59852600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr8:59850800-59852000	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr8:59850800-59852000	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr8:59850800-59860600	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr8:59851200-59852000	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr8:59851400-59852000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr8:59851400-59852200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr8:59851400-59852200	Strong transcription	Duodenum Mucosa	Duodenum
47	chr8:59851400-59852200	Strong transcription	Fetal Brain Female	brain
48	chr8:59851400-59878600	Weak transcription	Aorta	Aorta
49	chr8:59851600-59852000	Strong transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links