Variant report

Variant	rs16924215
Chromosome Location	chr8:59809785-59809786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10504270	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs13256423	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13261062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13261596	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13275234	1.00[ASW][hapmap];1.00[CEU][hapmap]
rs13282142	0.83[ASN][1000 genomes]
rs16924196	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16924281	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16924312	1.00[CEU][hapmap];0.87[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs16924325	0.85[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs16924370	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs35054015	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71521433	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71521435	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv890940	chr8:59785412-59809785	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv526468	chr8:59799820-59813809	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59771400-59811000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:59790800-59811200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr8:59791400-59811000	Weak transcription	Brain Angular Gyrus	brain
4	chr8:59794200-59820000	Weak transcription	Fetal Intestine Large	intestine
5	chr8:59794800-59811000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr8:59800600-59809800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:59800800-59810600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr8:59800800-59811000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr8:59801400-59811000	Weak transcription	Primary T cells from cord blood	blood
10	chr8:59802200-59810800	Weak transcription	HUVEC	blood vessel
11	chr8:59802800-59826600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr8:59804200-59811000	Weak transcription	Gastric	stomach
13	chr8:59805000-59812200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr8:59805000-59815200	Weak transcription	Fetal Heart	heart
15	chr8:59805200-59815600	Weak transcription	Fetal Stomach	stomach
16	chr8:59805400-59810600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr8:59805400-59826800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr8:59805600-59811000	Weak transcription	NHDF-Ad	bronchial
19	chr8:59806000-59814000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr8:59806400-59815400	Weak transcription	Colon Smooth Muscle	Colon
21	chr8:59807000-59810000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr8:59808200-59810200	Strong transcription	Fetal Thymus	thymus
23	chr8:59808400-59811400	Enhancers	Fetal Brain Male	brain
24	chr8:59808600-59815200	Weak transcription	Osteobl	bone
25	chr8:59809000-59826400	Weak transcription	Thymus	Thymus
26	chr8:59809200-59810800	Weak transcription	Dnd41	blood
27	chr8:59809400-59810000	Enhancers	Fetal Brain Female	brain
28	chr8:59809600-59810200	Enhancers	Brain Germinal Matrix	brain
29	chr8:59809600-59810400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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