Variant report

Variant	rs16924370
Chromosome Location	chr8:59892759-59892760
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10504270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13256423	0.87[CEU][hapmap];0.83[JPT][hapmap]
rs13261062	0.87[CEU][hapmap];0.83[JPT][hapmap]
rs13261596	0.81[EUR][1000 genomes]
rs13272611	0.80[ASN][1000 genomes]
rs13275234	0.85[CEU][hapmap];0.80[ASN][1000 genomes]
rs13282142	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13282292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16924196	0.87[CEU][hapmap];0.83[JPT][hapmap]
rs16924215	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs16924281	0.87[CEU][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16924312	0.87[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16924325	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1868347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34677816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59506150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71521433	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71521435	0.83[AMR][1000 genomes]
rs71521439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7838084	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59873600-59893200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr8:59887000-59895000	Weak transcription	NHDF-Ad	bronchial
3	chr8:59887600-59903600	Weak transcription	Osteobl	bone
4	chr8:59888000-59893200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr8:59888000-59894000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr8:59888000-59899400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:59888000-59903800	Weak transcription	Fetal Stomach	stomach
8	chr8:59889000-59893800	Strong transcription	Fetal Thymus	thymus
9	chr8:59889600-59893600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr8:59889800-59899800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:59889800-59927000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:59890200-59892800	Weak transcription	Primary T cells from cord blood	blood
13	chr8:59890400-59903200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr8:59891000-59916600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr8:59891200-59892800	Enhancers	Stomach Smooth Muscle	stomach
16	chr8:59891200-59903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:59891200-59918000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr8:59891400-59893600	Weak transcription	Thymus	Thymus
19	chr8:59891600-59900800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr8:59891600-59903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr8:59891800-59904200	Weak transcription	Fetal Intestine Small	intestine
22	chr8:59892000-59895200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr8:59892400-59894600	Weak transcription	Small Intestine	intestine
24	chr8:59892400-59898800	Weak transcription	Dnd41	blood

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