Variant report

Variant	rs7838084
Chromosome Location	chr8:59915185-59915186
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10504270	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13272611	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13275234	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13282142	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13282292	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16924312	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16924325	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16924370	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1868347	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34677816	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59506150	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71521439	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59889800-59927000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:59891000-59916600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr8:59891200-59918000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:59900400-59919000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:59902200-59924600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr8:59904800-59918400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:59905800-59921000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr8:59905800-59924200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr8:59905800-59925400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr8:59906000-59924400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr8:59907600-59918400	Weak transcription	Thymus	Thymus
12	chr8:59909200-59916000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr8:59910200-59924400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:59914000-59916600	Weak transcription	Primary T cells from cord blood	blood
15	chr8:59914000-59918200	Weak transcription	Small Intestine	intestine
16	chr8:59914600-59916800	Weak transcription	Dnd41	blood
17	chr8:59914800-59915800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr8:59915000-59918200	Weak transcription	Fetal Thymus	thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links