Variant report

Variant	rs13282806
Chromosome Location	chr8:59848644-59848645
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10094267	0.93[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10504271	0.88[CHD][hapmap];0.90[JPT][hapmap]
rs12155519	0.86[CHB][hapmap]
rs12542449	0.94[JPT][hapmap]
rs12545204	0.95[JPT][hapmap]
rs16918754	0.93[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16924312	0.87[LWK][hapmap]
rs16924316	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16924325	0.83[CHD][hapmap]
rs4237029	0.93[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs62505159	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7833731	0.90[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13282806	CYP7A1	cis	parietal	SCAN

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr8:59811600-59849000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr8:59811800-59848800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr8:59824200-59849600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:59831200-59860200	Weak transcription	Gastric	stomach
7	chr8:59834000-59860400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:59834400-59850800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr8:59835800-59851400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:59837200-59858200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr8:59839000-59860000	Weak transcription	Fetal Intestine Large	intestine
12	chr8:59839400-59851400	Weak transcription	Fetal Brain Female	brain
13	chr8:59839600-59857600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:59840000-59849600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr8:59840000-59854000	Strong transcription	Dnd41	blood
16	chr8:59840400-59850400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr8:59840400-59850400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr8:59840600-59849000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr8:59840800-59850200	Weak transcription	Fetal Stomach	stomach
20	chr8:59840800-59850400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr8:59841000-59848800	Weak transcription	Thymus	Thymus
22	chr8:59841000-59858000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr8:59841000-59859000	Weak transcription	Fetal Intestine Small	intestine
24	chr8:59841000-59861800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr8:59842400-59851400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr8:59843000-59852600	Strong transcription	Primary T cells from cord blood	blood
27	chr8:59843800-59863600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr8:59844400-59851200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr8:59844600-59853400	Strong transcription	Fetal Thymus	thymus
30	chr8:59845200-59851600	Weak transcription	Colon Smooth Muscle	Colon
31	chr8:59846600-59848800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr8:59846600-59849000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr8:59847000-59849200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr8:59847000-59857800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr8:59847200-59856000	Weak transcription	NHDF-Ad	bronchial
36	chr8:59847400-59853000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr8:59847400-59858000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr8:59847600-59857400	Weak transcription	HUVEC	blood vessel
39	chr8:59847600-59860400	Weak transcription	Small Intestine	intestine
40	chr8:59847800-59860600	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr8:59848200-59848800	Enhancers	NHEK	skin
42	chr8:59848200-59849000	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr8:59848200-59849000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr8:59848200-59849200	Enhancers	HMEC	breast
45	chr8:59848200-59851800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr8:59848400-59848800	Active TSS	ES-I3 Cell Line	embryonic stem cell
47	chr8:59848400-59849200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr8:59848400-59850200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr8:59848400-59852200	Strong transcription	Osteobl	bone
50	chr8:59848400-59852400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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