Variant report

Variant	rs4237029
Chromosome Location	chr8:59880128-59880129
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10094267	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10283344	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10504271	0.95[CEU][hapmap];0.85[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11777927	0.95[CEU][hapmap];0.81[CHB][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11987778	0.81[CHB][hapmap]
rs12542449	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12545204	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12677029	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13282806	0.93[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16918754	0.84[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[ASN][1000 genomes]
rs16924316	0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16924325	0.84[CHD][hapmap]
rs1968738	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6996740	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs746867	0.81[CHB][hapmap]
rs7815388	0.90[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7833731	0.95[CEU][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7836509	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4237029	CYP7A1	cis	parietal	SCAN

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59852000-59883400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr8:59852600-59888600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:59868200-59881200	Weak transcription	Primary T cells from cord blood	blood
4	chr8:59870200-59886600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:59872400-59887600	Weak transcription	Colon Smooth Muscle	Colon
6	chr8:59872600-59880200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:59872600-59882400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:59872800-59889200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr8:59873000-59883000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr8:59873600-59887600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr8:59873600-59893200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr8:59874800-59887600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:59876200-59880400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr8:59876400-59886200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:59876400-59886400	Weak transcription	Thymus	Thymus
16	chr8:59877200-59887600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr8:59877600-59887600	Weak transcription	Gastric	stomach
18	chr8:59878600-59880400	Enhancers	Primary T cells fromperipheralblood	blood
19	chr8:59878800-59881000	Weak transcription	HSMM	muscle
20	chr8:59878800-59883800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr8:59879000-59881000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:59879000-59884800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr8:59879000-59887600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr8:59879000-59887800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr8:59879000-59887800	Weak transcription	Dnd41	blood
26	chr8:59879200-59880200	Weak transcription	Fetal Heart	heart
27	chr8:59879200-59881000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr8:59879200-59882000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr8:59879200-59883000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr8:59879200-59883600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr8:59879200-59886600	Weak transcription	Osteobl	bone
32	chr8:59879200-59887600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr8:59879200-59887600	Weak transcription	Fetal Stomach	stomach
34	chr8:59880000-59880200	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr8:59880000-59880200	Enhancers	Right Ventricle	heart
36	chr8:59880000-59880200	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr8:59880000-59880400	Strong transcription	Fetal Thymus	thymus
38	chr8:59880000-59880600	Enhancers	Pancreas	Pancrea

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