Variant report

Variant	rs6996740
Chromosome Location	chr8:59888187-59888188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10094267	0.97[ASN][1000 genomes]
rs10283344	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10504271	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11777927	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12542449	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12545204	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12677029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16918754	0.84[ASN][1000 genomes]
rs16924316	0.86[ASN][1000 genomes]
rs1968738	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4237029	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7815388	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7833731	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7836509	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59852600-59888600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr8:59872800-59889200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr8:59873600-59893200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr8:59886000-59889400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:59886400-59888800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:59886800-59889000	Weak transcription	Fetal Thymus	thymus
7	chr8:59887000-59889200	Weak transcription	Thymus	Thymus
8	chr8:59887000-59895000	Weak transcription	NHDF-Ad	bronchial
9	chr8:59887600-59891400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:59887600-59903600	Weak transcription	Osteobl	bone
11	chr8:59887800-59888200	Enhancers	Dnd41	blood
12	chr8:59888000-59889000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr8:59888000-59889200	Weak transcription	Primary T cells from cord blood	blood
14	chr8:59888000-59889200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr8:59888000-59890000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr8:59888000-59893200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr8:59888000-59894000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr8:59888000-59899400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr8:59888000-59903800	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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