Variant report

Variant	rs12545204
Chromosome Location	chr8:59886312-59886313
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59884254..59886843-chr8:59905143..59907146,2	K562	blood:

Variant related genes	Relation type
ENSG00000254048	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10094267	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs10283344	0.95[CEU][hapmap];0.81[CHB][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10504271	0.95[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11777927	0.95[CEU][hapmap];0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11987778	0.81[CHB][hapmap]
rs12542449	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12677029	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13276445	0.81[JPT][hapmap]
rs13282806	0.95[JPT][hapmap]
rs16918754	0.84[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs16924316	0.85[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs1968738	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4237029	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6996740	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs746867	0.81[CHB][hapmap]
rs7815388	0.91[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7833731	0.95[CEU][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7836509	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59852600-59888600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr8:59870200-59886600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:59872400-59887600	Weak transcription	Colon Smooth Muscle	Colon
4	chr8:59872800-59889200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr8:59873600-59887600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:59873600-59893200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr8:59874800-59887600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:59876400-59886400	Weak transcription	Thymus	Thymus
9	chr8:59877200-59887600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr8:59877600-59887600	Weak transcription	Gastric	stomach
11	chr8:59879000-59887600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:59879000-59887800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr8:59879000-59887800	Weak transcription	Dnd41	blood
14	chr8:59879200-59886600	Weak transcription	Osteobl	bone
15	chr8:59879200-59887600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr8:59879200-59887600	Weak transcription	Fetal Stomach	stomach
17	chr8:59880400-59886400	Weak transcription	Fetal Thymus	thymus
18	chr8:59880600-59887600	Weak transcription	Pancreas	Pancrea
19	chr8:59884000-59887600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr8:59884800-59887200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr8:59885800-59887200	Enhancers	Primary T cells from cord blood	blood
22	chr8:59886000-59886400	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr8:59886000-59887200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr8:59886000-59889400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr8:59886200-59886400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr8:59886200-59887000	Enhancers	Primary T cells fromperipheralblood	blood
27	chr8:59886200-59887000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr8:59886200-59887000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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