Variant report

Variant	rs12677029
Chromosome Location	chr8:59889567-59889568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10094267	0.94[ASN][1000 genomes]
rs10283344	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10504271	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11777927	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12542449	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12545204	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16918754	0.81[ASN][1000 genomes]
rs16924316	0.83[ASN][1000 genomes]
rs1968738	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4237029	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6996740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7815388	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7833731	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7836509	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59873600-59893200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr8:59887000-59895000	Weak transcription	NHDF-Ad	bronchial
3	chr8:59887600-59891400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:59887600-59903600	Weak transcription	Osteobl	bone
5	chr8:59888000-59890000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:59888000-59893200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr8:59888000-59894000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr8:59888000-59899400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:59888000-59903800	Weak transcription	Fetal Stomach	stomach
10	chr8:59888600-59891600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
11	chr8:59888800-59891200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
12	chr8:59888800-59891600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:59889000-59892400	ZNF genes & repeats	Dnd41	blood
14	chr8:59889000-59893800	Strong transcription	Fetal Thymus	thymus
15	chr8:59889200-59889600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
16	chr8:59889200-59889800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:59889200-59889800	Strong transcription	Primary T cells from cord blood	blood
18	chr8:59889200-59890200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
19	chr8:59889200-59890800	ZNF genes & repeats	Thymus	Thymus
20	chr8:59889200-59891000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
21	chr8:59889400-59889600	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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