Variant report

Variant	rs13276445
Chromosome Location	chr8:59900620-59900621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10504271	0.85[JPT][hapmap]
rs11987778	0.82[CHB][hapmap]
rs12542449	0.84[JPT][hapmap]
rs12545204	0.81[JPT][hapmap]
rs1366290	0.87[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs16924380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs379881	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap];0.93[ASN][1000 genomes]
rs380013	0.82[CHB][hapmap]
rs407016	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs414596	0.98[ASN][1000 genomes]
rs422729	0.83[CHB][hapmap]
rs57754474	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs746867	0.82[CHB][hapmap]
rs7813241	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7825895	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7833731	0.87[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs7838029	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs826420	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs826596	0.81[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59887600-59903600	Weak transcription	Osteobl	bone
2	chr8:59888000-59903800	Weak transcription	Fetal Stomach	stomach
3	chr8:59889800-59927000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:59890400-59903200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:59891000-59916600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr8:59891200-59903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:59891200-59918000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr8:59891600-59900800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr8:59891600-59903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:59891800-59904200	Weak transcription	Fetal Intestine Small	intestine
11	chr8:59894800-59913600	Weak transcription	Small Intestine	intestine
12	chr8:59895800-59903200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr8:59896000-59902400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr8:59896000-59903600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr8:59896200-59903400	Weak transcription	Primary T cells from cord blood	blood
16	chr8:59896200-59903400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr8:59896200-59903600	Weak transcription	Right Atrium	heart
18	chr8:59896400-59903400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr8:59897800-59904400	Strong transcription	Fetal Thymus	thymus
20	chr8:59899400-59904000	Weak transcription	Colon Smooth Muscle	Colon
21	chr8:59900000-59904000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr8:59900400-59902400	Weak transcription	Dnd41	blood
23	chr8:59900400-59903200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr8:59900400-59903200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:59900400-59919000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr8:59900600-59903800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr8:59900600-59904400	Weak transcription	Thymus	Thymus

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