Variant report

Variant	rs1366290
Chromosome Location	chr8:59941575-59941576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11987778	0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs13276445	0.87[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs16924380	0.86[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs379881	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs407016	0.87[CHB][hapmap];0.87[ASN][1000 genomes]
rs414596	0.83[ASN][1000 genomes]
rs57754474	0.84[ASN][1000 genomes]
rs746867	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs7825895	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs7833731	0.81[CHB][hapmap]
rs826420	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs826596	0.87[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59921400-59942200	Weak transcription	Gastric	stomach
2	chr8:59928600-59941800	Weak transcription	HUVEC	blood vessel
3	chr8:59929800-59945000	Weak transcription	Fetal Stomach	stomach
4	chr8:59931200-59941800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr8:59931400-59945600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:59932000-59955600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr8:59933600-59942000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr8:59933600-59950800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr8:59933800-59941800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr8:59934000-59942600	Weak transcription	Colon Smooth Muscle	Colon
11	chr8:59934000-59945800	Weak transcription	Osteobl	bone
12	chr8:59934800-59941800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr8:59935200-59945800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr8:59935600-59941800	Weak transcription	Small Intestine	intestine
15	chr8:59936800-59944600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr8:59937400-59944000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr8:59937800-59941800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr8:59938400-59944600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr8:59938600-59945000	Weak transcription	Thymus	Thymus
20	chr8:59939800-59943800	Weak transcription	Fetal Thymus	thymus
21	chr8:59940000-59942000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr8:59940400-59945800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr8:59940600-59942000	Weak transcription	Primary T cells from cord blood	blood
24	chr8:59940600-59948400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr8:59940800-59942000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr8:59940800-59942600	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr8:59940800-59943400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr8:59941000-59943200	Enhancers	Dnd41	blood
29	chr8:59941200-59941600	Weak transcription	Brain Germinal Matrix	brain
30	chr8:59941200-59943200	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr8:59941200-59943400	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr8:59941400-59941600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr8:59941400-59942000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr8:59941400-59942200	Enhancers	Fetal Brain Male	brain
35	chr8:59941400-59942600	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr8:59941400-59944000	Enhancers	Cortex derived primary cultured neurospheres	brain

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