Variant report

Variant	rs57754474
Chromosome Location	chr8:59917637-59917638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59911633..59913501-chr8:59915823..59918576,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13276445	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1366290	0.84[ASN][1000 genomes]
rs16924380	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs379881	0.98[ASN][1000 genomes]
rs407016	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs414596	0.93[ASN][1000 genomes]
rs7813241	0.87[EUR][1000 genomes]
rs7825895	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7838029	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs826420	0.87[ASN][1000 genomes]
rs826596	0.84[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59889800-59927000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:59891200-59918000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:59900400-59919000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:59902200-59924600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr8:59904800-59918400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr8:59905800-59921000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr8:59905800-59924200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr8:59905800-59925400	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr8:59906000-59924400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr8:59907600-59918400	Weak transcription	Thymus	Thymus
11	chr8:59910200-59924400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:59914000-59918200	Weak transcription	Small Intestine	intestine
13	chr8:59915000-59918200	Weak transcription	Fetal Thymus	thymus
14	chr8:59916400-59918800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr8:59916600-59918400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr8:59916800-59918400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr8:59916800-59918400	Weak transcription	Fetal Brain Male	brain
18	chr8:59916800-59919000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr8:59916800-59928400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr8:59917000-59918200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr8:59917000-59918200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr8:59917000-59918400	Weak transcription	Colon Smooth Muscle	Colon
23	chr8:59917200-59918400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr8:59917200-59918400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr8:59917200-59918400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr8:59917200-59918400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr8:59917200-59922600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr8:59917400-59918200	Weak transcription	Dnd41	blood
29	chr8:59917600-59918600	Weak transcription	Primary T cells from cord blood	blood

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