Variant report

Variant	rs16924380
Chromosome Location	chr8:59898503-59898504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10504271	0.81[CHD][hapmap];0.85[JPT][hapmap]
rs11987778	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs12542449	0.83[JPT][hapmap]
rs13276445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1366290	0.86[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs379881	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];0.93[ASN][1000 genomes]
rs380013	0.82[CHB][hapmap]
rs407016	1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs414596	0.98[ASN][1000 genomes]
rs422729	0.83[CHB][hapmap]
rs57754474	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs746867	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs7813241	0.95[CEU][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7825895	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7833731	0.86[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs7838029	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs826420	0.95[CHB][hapmap];0.86[CHD][hapmap];0.83[ASN][1000 genomes]
rs826596	0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16924380	TOX	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59887600-59903600	Weak transcription	Osteobl	bone
2	chr8:59888000-59899400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:59888000-59903800	Weak transcription	Fetal Stomach	stomach
4	chr8:59889800-59899800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:59889800-59927000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:59890400-59903200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr8:59891000-59916600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr8:59891200-59903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr8:59891200-59918000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr8:59891600-59900800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr8:59891600-59903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr8:59891800-59904200	Weak transcription	Fetal Intestine Small	intestine
13	chr8:59892400-59898800	Weak transcription	Dnd41	blood
14	chr8:59894800-59913600	Weak transcription	Small Intestine	intestine
15	chr8:59895800-59899400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr8:59895800-59903200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr8:59896000-59898800	Weak transcription	Thymus	Thymus
18	chr8:59896000-59902400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr8:59896000-59903600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr8:59896200-59903400	Weak transcription	Primary T cells from cord blood	blood
21	chr8:59896200-59903400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr8:59896200-59903600	Weak transcription	Right Atrium	heart
23	chr8:59896400-59903400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr8:59897800-59904400	Strong transcription	Fetal Thymus	thymus

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