Variant report

Variant	rs13250584
Chromosome Location	chr8:108398832-108398833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:108398155..108399861-chr8:108402340..108405261,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12677137	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12678509	0.81[EUR][1000 genomes]
rs13268748	0.81[EUR][1000 genomes]
rs1433194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16876199	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16876200	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1821305	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60569707	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs930234	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs930235	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1030831	chr8:108224295-108466437	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv539714	chr8:108224295-108466437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108389800-108401200	Weak transcription	Fetal Kidney	kidney
2	chr8:108394000-108401400	Weak transcription	Ovary	ovary
3	chr8:108395800-108399600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:108396000-108399400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr8:108396200-108414000	Weak transcription	Osteobl	bone
6	chr8:108397400-108399400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:108397600-108399200	Weak transcription	Fetal Lung	lung
8	chr8:108397800-108399600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr8:108397800-108399600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr8:108397800-108399800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr8:108397800-108399800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:108397800-108400000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr8:108398000-108399000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr8:108398000-108399200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr8:108398000-108399800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr8:108398400-108399800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:108398600-108399200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr8:108398600-108399400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr8:108398600-108399400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr8:108398800-108399200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr8:108398800-108399800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:108398800-108400000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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