Variant report

Variant	rs16876199
Chromosome Location	chr8:108395025-108395026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12677137	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12678509	0.81[EUR][1000 genomes]
rs13250584	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13255500	0.82[CHD][hapmap]
rs13263947	0.82[CHD][hapmap]
rs13268748	0.81[EUR][1000 genomes]
rs13280030	0.82[CHD][hapmap]
rs1433194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16876200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1821305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60569707	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6991687	0.82[CHD][hapmap]
rs930234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs930235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1030831	chr8:108224295-108466437	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv539714	chr8:108224295-108466437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108387200-108395200	Weak transcription	Psoas Muscle	Psoas
2	chr8:108389800-108401200	Weak transcription	Fetal Kidney	kidney
3	chr8:108390000-108395400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:108390200-108395200	Weak transcription	Osteobl	bone
5	chr8:108390400-108397000	Weak transcription	Fetal Lung	lung
6	chr8:108391600-108395400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:108392400-108396000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr8:108393800-108397000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr8:108393800-108397800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr8:108393800-108397800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:108393800-108398200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:108394000-108397000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr8:108394000-108401400	Weak transcription	Ovary	ovary
14	chr8:108394400-108395800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr8:108394600-108395200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:108394600-108395800	Enhancers	Stomach Smooth Muscle	stomach
17	chr8:108394800-108395400	Enhancers	Brain Anterior Caudate	brain
18	chr8:108394800-108395600	Enhancers	Fetal Heart	heart
19	chr8:108394800-108395800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:108395000-108395800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links