Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:108419893..108422484-chr8:108427371..108429959,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11991529	0.84[ASN][1000 genomes]
rs12677137	0.93[EUR][1000 genomes]
rs12678509	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13250584	0.81[EUR][1000 genomes]
rs13255500	0.86[ASN][1000 genomes]
rs13257372	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13263947	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13264356	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13265214	0.87[ASN][1000 genomes]
rs13280030	0.87[ASN][1000 genomes]
rs13281824	0.87[ASN][1000 genomes]
rs1433194	0.81[EUR][1000 genomes]
rs16876199	0.81[EUR][1000 genomes]
rs16876200	0.81[EUR][1000 genomes]
rs1821305	0.81[EUR][1000 genomes]
rs34562665	0.87[ASN][1000 genomes]
rs34612085	0.87[ASN][1000 genomes]
rs60569707	0.81[EUR][1000 genomes]
rs6991687	0.94[ASN][1000 genomes]
rs71524708	0.88[ASN][1000 genomes]
rs71562145	0.90[ASN][1000 genomes]
rs930234	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs930235	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs9650030	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1030831	chr8:108224295-108466437	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv539714	chr8:108224295-108466437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108420200-108429000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:108420200-108441400	Weak transcription	Aorta	Aorta
3	chr8:108421800-108433800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:108421800-108448200	Weak transcription	Psoas Muscle	Psoas
5	chr8:108423000-108431200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:108426600-108428000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:108426600-108428400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:108426800-108427800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr8:108426800-108428000	Enhancers	HSMM	muscle
10	chr8:108426800-108428000	Enhancers	Osteobl	bone
11	chr8:108427000-108428000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:108427200-108427800	Enhancers	NHLF	lung
13	chr8:108427400-108432600	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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