Variant report

Variant	rs13251
Chromosome Location	chr7:38765565-38765566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17171458	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17171461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1859936	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61246172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73694709	0.86[AFR][1000 genomes]
rs73694736	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887965	chr7:38706384-38793243	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38749000-38803600	Weak transcription	Fetal Brain Male	brain
2	chr7:38755000-38791200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:38755800-38771600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:38757000-38784200	Weak transcription	HMEC	breast
5	chr7:38757200-38835400	Weak transcription	Psoas Muscle	Psoas
6	chr7:38758600-38767000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:38758600-38767800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr7:38758600-38780600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr7:38758800-38766400	Weak transcription	Brain Germinal Matrix	brain
10	chr7:38758800-38780000	Weak transcription	Brain Substantia Nigra	brain
11	chr7:38759000-38770600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr7:38759200-38810200	Weak transcription	A549	lung
13	chr7:38759400-38810600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr7:38759600-38779600	Weak transcription	Thymus	Thymus
15	chr7:38759600-38784200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr7:38759800-38768000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr7:38759800-38780600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:38760000-38773000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:38760000-38799800	Weak transcription	HUVEC	blood vessel
20	chr7:38760600-38769800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr7:38760600-38770000	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr7:38760600-38800200	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr7:38760800-38769800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr7:38761000-38820400	Weak transcription	Stomach Mucosa	stomach
25	chr7:38761200-38785400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr7:38761600-38766400	Weak transcription	GM12878-XiMat	blood
27	chr7:38762600-38793200	Weak transcription	Hela-S3	cervix
28	chr7:38763000-38767000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr7:38763200-38828000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr7:38763400-38769800	Strong transcription	Adipose Nuclei	Adipose
31	chr7:38763400-38780400	Weak transcription	Fetal Kidney	kidney
32	chr7:38763400-38792600	Weak transcription	Small Intestine	intestine
33	chr7:38763400-38828800	Weak transcription	HepG2	liver
34	chr7:38763600-38767200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr7:38763600-38772000	Strong transcription	Liver	Liver
36	chr7:38763800-38767400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr7:38763800-38791600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr7:38764000-38769000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:38764000-38769400	Strong transcription	Brain Anterior Caudate	brain
40	chr7:38764000-38769800	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr7:38764000-38769800	Strong transcription	Fetal Intestine Small	intestine
42	chr7:38764200-38765600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr7:38764200-38765600	Strong transcription	Spleen	Spleen
44	chr7:38764200-38766200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr7:38764200-38767600	Strong transcription	Aorta	Aorta
46	chr7:38764200-38767600	Strong transcription	Left Ventricle	heart
47	chr7:38764200-38768600	Strong transcription	Brain Cingulate Gyrus	brain
48	chr7:38764200-38768800	Strong transcription	Fetal Muscle Trunk	muscle
49	chr7:38764200-38769400	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr7:38764200-38769800	Strong transcription	Fetal Intestine Large	intestine

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