The 2.0 version of rSNPBase

Variant report

Variant rs17171458
Chromosome Location chr7:38797821-38797822
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:38749000-38803600 Weak transcription Fetal Brain Male brain
2 chr7:38757200-38835400 Weak transcription Psoas Muscle Psoas
3 chr7:38759200-38810200 Weak transcription A549 lung
4 chr7:38759400-38810600 Weak transcription Placenta Amnion Placenta Amnion
5 chr7:38760000-38799800 Weak transcription HUVEC blood vessel
6 chr7:38760600-38800200 Strong transcription Monocytes-CD14+_RO01746 blood
7 chr7:38761000-38820400 Weak transcription Stomach Mucosa stomach
8 chr7:38763200-38828000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
9 chr7:38763400-38828800 Weak transcription HepG2 liver
10 chr7:38765400-38802800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr7:38767200-38802800 Weak transcription Right Ventricle heart
12 chr7:38767200-38805800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr7:38774800-38816800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
14 chr7:38775800-38816600 Strong transcription Primary monocytes fromperipheralblood blood
15 chr7:38777400-38800400 Strong transcription Primary B cells from cord blood blood
16 chr7:38780800-38803600 Weak transcription Brain Inferior Temporal Lobe brain
17 chr7:38780800-38806000 Weak transcription Fetal Brain Female brain
18 chr7:38780800-38828800 Weak transcription Gastric stomach
19 chr7:38781400-38805800 Weak transcription Brain Substantia Nigra brain
20 chr7:38784400-38805800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
21 chr7:38784600-38805800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr7:38784800-38835000 Weak transcription NHEK skin
23 chr7:38785000-38815800 Weak transcription NHLF lung
24 chr7:38785600-38834600 Weak transcription HMEC breast
25 chr7:38785600-38835000 Weak transcription NH-A brain
26 chr7:38786600-38805800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr7:38786600-38805800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr7:38786600-38806000 Weak transcription Brain Cingulate Gyrus brain
29 chr7:38787000-38827400 Weak transcription Primary T helper naive cells from peripheral blood blood
30 chr7:38789000-38800000 Strong transcription Primary T helper cells fromperipheralblood blood
31 chr7:38789000-38818800 Strong transcription Primary B cells from peripheral blood blood
32 chr7:38789200-38800000 Strong transcription Fetal Intestine Large intestine
33 chr7:38789400-38799600 Strong transcription Breast Myoepithelial Primary Cells Breast
34 chr7:38789600-38798000 Strong transcription Primary hematopoietic stem cells blood
35 chr7:38789600-38799600 Strong transcription Adipose Nuclei Adipose
36 chr7:38789600-38800000 Strong transcription Liver Liver
37 chr7:38789600-38800200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr7:38789600-38811000 Weak transcription Pancreatic Islets Pancreatic Islet
39 chr7:38789600-38816800 Strong transcription Primary T cells fromperipheralblood blood
40 chr7:38790200-38799200 Strong transcription Primary T regulatory cells fromperipheralblood blood
41 chr7:38790200-38800000 Strong transcription Primary T helper cells PMA-I stimulated --
42 chr7:38790800-38799400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr7:38791200-38802600 Weak transcription Brain Anterior Caudate brain
44 chr7:38791400-38812600 Weak transcription Skeletal Muscle Male skeletal muscle
45 chr7:38791600-38801600 Weak transcription HSMM muscle
46 chr7:38791800-38801600 Weak transcription NHDF-Ad bronchial
47 chr7:38791800-38813400 Weak transcription Osteobl bone
48 chr7:38791800-38814200 Weak transcription K562 blood
49 chr7:38792000-38798800 Weak transcription H9 Cell Line embryonic stem cell
50 chr7:38792000-38802200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood

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Last update: Aug 31, 2015