Variant report

Variant	rs17171461
Chromosome Location	chr7:38807675-38807676
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17171458	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1859936	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61246172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73694736	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38757200-38835400	Weak transcription	Psoas Muscle	Psoas
2	chr7:38759200-38810200	Weak transcription	A549	lung
3	chr7:38759400-38810600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:38761000-38820400	Weak transcription	Stomach Mucosa	stomach
5	chr7:38763200-38828000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr7:38763400-38828800	Weak transcription	HepG2	liver
7	chr7:38774800-38816800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:38775800-38816600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr7:38780800-38828800	Weak transcription	Gastric	stomach
10	chr7:38784800-38835000	Weak transcription	NHEK	skin
11	chr7:38785000-38815800	Weak transcription	NHLF	lung
12	chr7:38785600-38834600	Weak transcription	HMEC	breast
13	chr7:38785600-38835000	Weak transcription	NH-A	brain
14	chr7:38787000-38827400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr7:38789000-38818800	Strong transcription	Primary B cells from peripheral blood	blood
16	chr7:38789600-38811000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr7:38789600-38816800	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr7:38791400-38812600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr7:38791800-38813400	Weak transcription	Osteobl	bone
20	chr7:38791800-38814200	Weak transcription	K562	blood
21	chr7:38792000-38810800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:38792000-38812600	Weak transcription	Brain Germinal Matrix	brain
23	chr7:38792200-38828000	Weak transcription	Colon Smooth Muscle	Colon
24	chr7:38792400-38821800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr7:38793200-38818200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr7:38793400-38828600	Weak transcription	Small Intestine	intestine
27	chr7:38793400-38861200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr7:38793600-38832600	Weak transcription	Brain Angular Gyrus	brain
29	chr7:38796400-38812600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr7:38798200-38828800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr7:38800200-38812200	Weak transcription	HUVEC	blood vessel
32	chr7:38800200-38837600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr7:38800400-38811200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr7:38801000-38810600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr7:38801000-38818400	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr7:38801200-38809800	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr7:38801600-38816400	Strong transcription	Liver	Liver
38	chr7:38801600-38817600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr7:38801800-38809600	Strong transcription	Placenta	Placenta
40	chr7:38801800-38816200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr7:38802000-38808000	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr7:38802000-38809600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr7:38802000-38816600	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr7:38802000-38816600	Strong transcription	Adipose Nuclei	Adipose
45	chr7:38802800-38810200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr7:38803000-38810200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr7:38803000-38810800	Weak transcription	NHDF-Ad	bronchial
48	chr7:38803200-38845400	Weak transcription	Colonic Mucosa	Colon
49	chr7:38803200-38846000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr7:38803400-38810400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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