Variant report

Variant	rs13252711
Chromosome Location	chr8:2165057-2165058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11774799	1.00[AFR][1000 genomes]
rs73171424	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7834227	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2151600-2166800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr8:2151800-2166800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr8:2163000-2166400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr8:2163000-2166800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr8:2163200-2166600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr8:2163200-2166800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr8:2163200-2166800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr8:2163600-2166400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr8:2163600-2166600	Weak transcription	Primary T cells from cord blood	blood
10	chr8:2164000-2166800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr8:2164600-2166400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr8:2164600-2184400	Weak transcription	Spleen	Spleen
13	chr8:2164800-2166200	Weak transcription	Dnd41	blood
14	chr8:2164800-2167600	Weak transcription	Fetal Thymus	thymus
15	chr8:2164800-2172000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:2165000-2166400	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr8:2165000-2170000	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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