Variant report

Variant	rs13253465
Chromosome Location	chr8:50106551-50106552
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:50104222..50107867-chr8:50114217..50118175,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C8orf22-2	chr8:50103993-50107149	NONHSAT126506

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1031926	0.83[ASN][1000 genomes]
rs10808757	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12375307	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12541915	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12546213	0.87[ASN][1000 genomes]
rs12547293	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12674878	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12679153	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13258781	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13261261	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13263971	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13272410	0.83[ASN][1000 genomes]
rs1480385	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1480386	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16906121	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16906585	0.87[ASN][1000 genomes]
rs16906613	0.85[ASN][1000 genomes]
rs2662897	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2726705	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2726710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34086229	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34527186	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34893562	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35141848	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35575648	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4506233	0.87[ASN][1000 genomes]
rs4873341	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6981407	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6988643	0.81[AMR][1000 genomes]
rs7007288	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7015183	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7817650	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9792189	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9792221	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs985986	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1034908	chr8:50023423-50416049	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv539601	chr8:50023423-50416049	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1024410	chr8:50037085-50511501	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv428517	chr8:50094920-50232993	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50105800-50108400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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