Variant report

Variant	rs2726705
Chromosome Location	chr8:50069107-50069108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10808757	0.83[AFR][1000 genomes]
rs12375307	0.82[ASN][1000 genomes]
rs12541915	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12546213	0.82[ASN][1000 genomes]
rs12547293	0.85[ASN][1000 genomes]
rs12674878	0.81[ASN][1000 genomes]
rs12679153	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs13253465	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13258781	0.82[ASN][1000 genomes]
rs13261261	0.82[ASN][1000 genomes]
rs13263971	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1480385	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1480386	0.82[ASN][1000 genomes]
rs1613684	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16906121	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs16906585	0.82[ASN][1000 genomes]
rs16906613	0.81[ASN][1000 genomes]
rs1876720	0.81[ASN][1000 genomes]
rs2175033	0.81[ASN][1000 genomes]
rs2662897	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2726710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2726711	0.81[ASN][1000 genomes]
rs2726714	0.81[ASN][1000 genomes]
rs34086229	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34527186	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs34893562	0.85[ASN][1000 genomes]
rs35141848	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs35575648	0.83[AFR][1000 genomes]
rs4506233	0.82[ASN][1000 genomes]
rs4873341	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6981407	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7007288	0.81[ASN][1000 genomes]
rs7015183	0.85[ASN][1000 genomes]
rs7817650	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9792189	0.82[ASN][1000 genomes]
rs9792221	0.81[ASN][1000 genomes]
rs985986	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	esv1793350	chr8:50013702-50102628	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1034908	chr8:50023423-50416049	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv539601	chr8:50023423-50416049	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1024410	chr8:50037085-50511501	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50069000-50069200	ZNF genes & repeats	GM12878-XiMat	blood
2	chr8:50069000-50069600	Active TSS	Fetal Lung	lung

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