Variant report
| Variant | rs2662897 |
|---|---|
| Chromosome Location | chr8:50064902-50064903 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs12375307 | 0.80[ASN][1000 genomes] |
| rs12541915 | 0.83[ASN][1000 genomes] |
| rs12546213 | 0.80[ASN][1000 genomes] |
| rs12547293 | 0.83[ASN][1000 genomes] |
| rs12679153 | 0.81[ASN][1000 genomes] |
| rs13253465 | 0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs13258781 | 0.80[ASN][1000 genomes] |
| rs13261261 | 0.80[ASN][1000 genomes] |
| rs1480385 | 0.83[ASN][1000 genomes] |
| rs1480386 | 0.80[ASN][1000 genomes] |
| rs1617791 | 0.81[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs16906121 | 0.83[ASN][1000 genomes] |
| rs16906585 | 0.80[ASN][1000 genomes] |
| rs2726705 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2726710 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs34086229 | 0.85[ASN][1000 genomes] |
| rs34527186 | 0.83[ASN][1000 genomes] |
| rs34893562 | 0.83[ASN][1000 genomes] |
| rs35141848 | 0.80[ASN][1000 genomes] |
| rs4506233 | 0.80[ASN][1000 genomes] |
| rs4873341 | 0.83[ASN][1000 genomes] |
| rs6981407 | 0.83[ASN][1000 genomes] |
| rs7015183 | 0.83[ASN][1000 genomes] |
| rs7817650 | 0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9792189 | 0.80[ASN][1000 genomes] |
| rs985986 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1025068 | chr8:49953397-50370208 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 2 | esv1793350 | chr8:50013702-50102628 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1034908 | chr8:50023423-50416049 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv539601 | chr8:50023423-50416049 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv1024410 | chr8:50037085-50511501 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:50064200-50065200 | Enhancers | K562 | blood |
| 2 | chr8:50064600-50065000 | Flanking Active TSS | GM12878-XiMat | blood |
