Variant report

Variant	rs13253882
Chromosome Location	chr8:105909316-105909317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10090981	0.89[EUR][1000 genomes]
rs12544929	0.88[EUR][1000 genomes]
rs12545436	0.88[EUR][1000 genomes]
rs13264197	0.85[EUR][1000 genomes]
rs13267650	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1460242	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551722	0.88[EUR][1000 genomes]
rs2199261	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2290865	0.90[EUR][1000 genomes]
rs2685532	0.85[EUR][1000 genomes]
rs284500	0.91[EUR][1000 genomes]
rs4392867	0.88[EUR][1000 genomes]
rs4734114	0.87[EUR][1000 genomes]
rs4734826	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4734827	0.89[EUR][1000 genomes]
rs4734829	0.86[EUR][1000 genomes]
rs4734830	0.88[EUR][1000 genomes]
rs4734831	0.88[EUR][1000 genomes]
rs4734832	0.88[EUR][1000 genomes]
rs6468970	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6468976	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv2761456	chr8:105902833-105913971	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105907000-105909400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:105907200-105909400	Enhancers	Brain Substantia Nigra	brain
3	chr8:105907200-105909600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:105907200-105909600	Enhancers	Brain Angular Gyrus	brain
5	chr8:105907200-105909600	Enhancers	Brain Anterior Caudate	brain
6	chr8:105907400-105909400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr8:105907600-105909400	Enhancers	Brain Cingulate Gyrus	brain
8	chr8:105908200-105909800	Enhancers	Gastric	stomach
9	chr8:105908200-105912800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:105908400-105909400	Enhancers	Esophagus	oesophagus
11	chr8:105909200-105909400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr8:105909200-105909400	Enhancers	Brain Hippocampus Middle	brain
13	chr8:105909200-105910400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr8:105909200-105912600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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