Variant report

Variant	rs4734827
Chromosome Location	chr8:105899347-105899348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10090981	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12544929	0.97[EUR][1000 genomes]
rs12545436	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13253882	0.89[EUR][1000 genomes]
rs13264197	0.94[EUR][1000 genomes]
rs13267650	0.87[EUR][1000 genomes]
rs1460242	0.87[EUR][1000 genomes]
rs1551722	0.97[EUR][1000 genomes]
rs2199261	0.87[EUR][1000 genomes]
rs2290865	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs284500	0.81[EUR][1000 genomes]
rs4392867	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4734114	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4734826	0.90[EUR][1000 genomes]
rs4734829	0.96[EUR][1000 genomes]
rs4734830	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4734831	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4734832	0.97[EUR][1000 genomes]
rs6468970	0.90[EUR][1000 genomes]
rs6468976	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105898000-105905000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:105898200-105899600	Enhancers	Fetal Brain Male	brain
3	chr8:105898200-105900000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:105898400-105899800	Enhancers	Brain Cingulate Gyrus	brain
5	chr8:105898600-105899600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr8:105898600-105899600	Enhancers	Brain Substantia Nigra	brain
7	chr8:105898800-105899400	Enhancers	Brain Hippocampus Middle	brain
8	chr8:105898800-105899600	Enhancers	NH-A	brain
9	chr8:105899000-105899400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:105899000-105899600	Enhancers	Brain Anterior Caudate	brain
11	chr8:105899000-105899600	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr8:105899200-105900000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:105899200-105900800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:105899200-105903400	Weak transcription	NHDF-Ad	bronchial

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