Variant report

Variant	rs13254433
Chromosome Location	chr8:90254532-90254533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10086145	0.90[EUR][1000 genomes]
rs10102049	0.90[EUR][1000 genomes]
rs10107649	0.86[EUR][1000 genomes]
rs1011271	0.85[EUR][1000 genomes]
rs1037333	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10504876	0.90[EUR][1000 genomes]
rs1114316	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11785662	0.85[EUR][1000 genomes]
rs11785864	0.87[EUR][1000 genomes]
rs12547059	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12549342	0.85[EUR][1000 genomes]
rs13252577	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13253403	0.90[AFR][1000 genomes]
rs13262086	0.90[EUR][1000 genomes]
rs13273491	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13278618	0.90[EUR][1000 genomes]
rs13279324	0.89[EUR][1000 genomes]
rs1383035	0.89[EUR][1000 genomes]
rs1383036	0.85[EUR][1000 genomes]
rs1383037	0.85[EUR][1000 genomes]
rs1479898	0.90[EUR][1000 genomes]
rs1600505	0.92[EUR][1000 genomes]
rs1600506	0.92[EUR][1000 genomes]
rs16893960	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1824967	0.89[EUR][1000 genomes]
rs1842297	0.89[EUR][1000 genomes]
rs2068088	0.88[EUR][1000 genomes]
rs2127502	0.85[AFR][1000 genomes]
rs2198094	0.90[EUR][1000 genomes]
rs2219864	0.88[EUR][1000 genomes]
rs2338697	0.85[EUR][1000 genomes]
rs2879240	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs318261	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35369616	0.85[EUR][1000 genomes]
rs35981062	0.85[EUR][1000 genomes]
rs4246119	0.87[EUR][1000 genomes]
rs4266696	0.87[EUR][1000 genomes]
rs4268168	0.88[EUR][1000 genomes]
rs4291311	0.85[EUR][1000 genomes]
rs4380986	0.87[EUR][1000 genomes]
rs4493948	0.87[EUR][1000 genomes]
rs4506265	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4509384	0.88[EUR][1000 genomes]
rs4588905	0.85[EUR][1000 genomes]
rs4960969	0.85[EUR][1000 genomes]
rs4961128	0.87[EUR][1000 genomes]
rs4961129	0.86[EUR][1000 genomes]
rs58699294	0.81[EUR][1000 genomes]
rs6469976	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6983174	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6989492	0.85[EUR][1000 genomes]
rs6990609	0.85[EUR][1000 genomes]
rs7012184	0.85[EUR][1000 genomes]
rs7014069	0.85[EUR][1000 genomes]
rs72665939	0.83[EUR][1000 genomes]
rs7817287	0.85[EUR][1000 genomes]
rs7818117	0.82[EUR][1000 genomes]
rs7818636	0.90[EUR][1000 genomes]
rs7820067	0.85[EUR][1000 genomes]
rs7821252	0.89[EUR][1000 genomes]
rs7824161	0.90[AFR][1000 genomes]
rs7826977	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7828790	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7835780	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7837196	0.90[EUR][1000 genomes]
rs7837625	0.90[EUR][1000 genomes]
rs7840648	0.85[EUR][1000 genomes]
rs7843823	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9656807	0.87[EUR][1000 genomes]
rs9656936	0.87[EUR][1000 genomes]
rs989108	0.90[EUR][1000 genomes]
rs999542	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs999543	0.90[EUR][1000 genomes]
rs999544	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1024956	chr8:90104423-90459539	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv539671	chr8:90104423-90459539	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032886	chr8:90253748-90398240	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90248600-90259600	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr8:90250000-90259600	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr8:90251400-90259400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr8:90251800-90257400	Enhancers	Dnd41	blood
5	chr8:90252800-90254800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr8:90253400-90254600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr8:90253400-90257200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr8:90253800-90257000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr8:90254000-90255400	Enhancers	Primary T cells from cord blood	blood
10	chr8:90254000-90255600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr8:90254200-90254800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr8:90254200-90255600	Weak transcription	NHDF-Ad	bronchial
13	chr8:90254400-90254600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood

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