Variant report
Variant | rs2127502 |
---|---|
Chromosome Location | chr8:90317695-90317696 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr8:90313557..90316348-chr8:90316997..90319764,3 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10087044 | 0.84[EUR][1000 genomes] |
rs10093060 | 0.82[EUR][1000 genomes] |
rs10111836 | 0.83[EUR][1000 genomes] |
rs1037333 | 0.87[AFR][1000 genomes] |
rs1118667 | 0.85[EUR][1000 genomes] |
rs11783731 | 0.81[EUR][1000 genomes] |
rs11784437 | 0.81[EUR][1000 genomes] |
rs11785662 | 0.83[AFR][1000 genomes] |
rs12216726 | 0.82[EUR][1000 genomes] |
rs12216736 | 0.83[EUR][1000 genomes] |
rs12676058 | 0.81[EUR][1000 genomes] |
rs12676097 | 0.85[EUR][1000 genomes] |
rs12682126 | 0.81[EUR][1000 genomes] |
rs13253403 | 0.88[AFR][1000 genomes];0.84[EUR][1000 genomes] |
rs13254433 | 0.85[AFR][1000 genomes] |
rs1479905 | 0.83[EUR][1000 genomes] |
rs1479912 | 0.81[EUR][1000 genomes] |
rs16894311 | 0.81[EUR][1000 genomes] |
rs1842299 | 0.83[EUR][1000 genomes] |
rs1947834 | 0.84[EUR][1000 genomes] |
rs1947835 | 0.83[EUR][1000 genomes] |
rs2338698 | 0.84[EUR][1000 genomes] |
rs2879240 | 0.83[AFR][1000 genomes] |
rs4256633 | 0.83[EUR][1000 genomes] |
rs4263817 | 0.81[EUR][1000 genomes] |
rs4401905 | 0.86[EUR][1000 genomes] |
rs4506265 | 0.97[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes] |
rs6980760 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6983174 | 0.87[AFR][1000 genomes] |
rs6998262 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs7824161 | 0.88[AFR][1000 genomes];0.83[EUR][1000 genomes] |
rs7826977 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes] |
rs7828790 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes] |
rs7835780 | 1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes] |
rs7846060 | 0.81[EUR][1000 genomes] |
rs899638 | 0.86[EUR][1000 genomes] |
rs9650082 | 0.81[EUR][1000 genomes] |
rs9987335 | 0.82[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv465735 | chr8:89760311-90729507 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
2 | nsv611714 | chr8:89760311-90729507 | Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
3 | nsv1024956 | chr8:90104423-90459539 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
4 | nsv539671 | chr8:90104423-90459539 | Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
5 | nsv1032886 | chr8:90253748-90398240 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
6 | nsv891178 | chr8:90289326-90337010 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
7 | nsv891179 | chr8:90307652-90335826 | Enhancers Active TSS Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:90314800-90318800 | Weak transcription | Dnd41 | blood |