Variant report

Variant	rs6980760
Chromosome Location	chr8:90327155-90327156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10087044	0.88[EUR][1000 genomes]
rs10093060	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10098050	0.84[AMR][1000 genomes]
rs10111836	0.87[EUR][1000 genomes]
rs1011271	0.84[AFR][1000 genomes]
rs1118667	0.86[EUR][1000 genomes]
rs11783731	0.89[EUR][1000 genomes]
rs11784437	0.89[EUR][1000 genomes]
rs12216726	0.87[EUR][1000 genomes]
rs12216736	0.88[EUR][1000 genomes]
rs12676058	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12676097	0.86[EUR][1000 genomes]
rs12682126	0.89[EUR][1000 genomes]
rs13253403	0.84[EUR][1000 genomes]
rs1479905	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1479912	0.89[EUR][1000 genomes]
rs16894311	0.89[EUR][1000 genomes]
rs1824968	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1842299	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1904521	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1947834	0.88[EUR][1000 genomes]
rs1947835	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2127502	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2338698	0.89[EUR][1000 genomes]
rs3903526	0.80[EUR][1000 genomes]
rs4256633	0.88[EUR][1000 genomes]
rs4263817	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4401905	0.86[EUR][1000 genomes]
rs4506265	0.81[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap]
rs6981493	0.81[EUR][1000 genomes]
rs6985497	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6998262	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7013795	0.80[EUR][1000 genomes]
rs7018458	0.81[EUR][1000 genomes]
rs7824161	0.85[EUR][1000 genomes]
rs7826977	1.00[YRI][hapmap]
rs7828790	1.00[YRI][hapmap]
rs7835780	0.84[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap]
rs7846060	0.89[EUR][1000 genomes]
rs899638	0.86[EUR][1000 genomes]
rs9650082	0.89[EUR][1000 genomes]
rs9987335	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1024956	chr8:90104423-90459539	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv539671	chr8:90104423-90459539	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032886	chr8:90253748-90398240	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
6	nsv891178	chr8:90289326-90337010	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv891179	chr8:90307652-90335826	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv2757280	chr8:90321647-90338278	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv2759627	chr8:90321647-90338278	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90323400-90327600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:90324600-90327200	Enhancers	HUVEC	blood vessel

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