Variant report

Variant	rs1325466
Chromosome Location	chr13:75941921-75941922
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:75936738..75942482-chr13:75944415..75947523,6	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1408930	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1821127	0.97[ASN][1000 genomes]
rs2104418	0.88[EUR][1000 genomes]
rs2328940	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3825441	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4885286	0.90[EUR][1000 genomes]
rs5021641	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs6562886	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6562887	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7321494	0.82[CHB][hapmap]
rs7330729	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7983831	0.91[EUR][1000 genomes]
rs7991823	0.97[ASN][1000 genomes]
rs7992747	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7998651	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9565154	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9565157	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573529	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573531	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573532	1.00[ASN][1000 genomes]
rs9573533	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498067	chr13:75178898-76012362	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:75902600-75947000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr13:75910800-75947600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr13:75929600-75947600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:75932400-75944400	Weak transcription	Spleen	Spleen
5	chr13:75933000-75943000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:75934800-75947200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr13:75936600-75942400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr13:75936600-75942600	Weak transcription	Fetal Stomach	stomach
9	chr13:75936600-75942800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr13:75936600-75943000	Weak transcription	Ovary	ovary
11	chr13:75936600-75947600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr13:75936600-75947600	Weak transcription	Lung	lung
13	chr13:75937200-75945600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr13:75937800-75945800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr13:75939200-75943800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr13:75939400-75943000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr13:75939600-75942400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr13:75940400-75942000	Enhancers	Fetal Lung	lung
19	chr13:75940400-75942000	Weak transcription	Fetal Thymus	thymus
20	chr13:75940400-75942400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr13:75940400-75942600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr13:75940400-75942800	Enhancers	NHDF-Ad	bronchial
23	chr13:75940400-75943400	Enhancers	HSMM	muscle
24	chr13:75940400-75944400	Weak transcription	K562	blood
25	chr13:75940400-75945200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr13:75940400-75947200	Weak transcription	Fetal Muscle Leg	muscle
27	chr13:75940600-75942000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr13:75940600-75942000	Enhancers	Muscle Satellite Cultured Cells	--
29	chr13:75940600-75942000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr13:75940600-75942000	Enhancers	Osteobl	bone
31	chr13:75940600-75942200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr13:75940600-75942800	Weak transcription	Left Ventricle	heart
33	chr13:75940600-75943000	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr13:75940600-75946800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr13:75940600-75947200	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr13:75940800-75942400	Weak transcription	Hela-S3	cervix
37	chr13:75940800-75942800	Enhancers	GM12878-XiMat	blood
38	chr13:75941000-75942800	Enhancers	Fetal Kidney	kidney
39	chr13:75941200-75942000	Weak transcription	HSMMtube	muscle
40	chr13:75941200-75942200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr13:75941200-75942200	Enhancers	NH-A	brain
42	chr13:75941200-75942400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr13:75941200-75942400	Weak transcription	Duodenum Mucosa	Duodenum
44	chr13:75941200-75942600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr13:75941200-75942800	Weak transcription	Psoas Muscle	Psoas
46	chr13:75941400-75942000	Enhancers	Pancreatic Islets	Pancreatic Islet
47	chr13:75941400-75942400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr13:75941400-75942400	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr13:75941400-75942800	Enhancers	Adipose Nuclei	Adipose
50	chr13:75941400-75942800	Flanking Active TSS	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links