Variant report

Variant	rs9565154
Chromosome Location	chr13:75942540-75942541
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1325466	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1408930	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17254379	1.00[CEU][hapmap]
rs1821127	0.97[ASN][1000 genomes]
rs2104418	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2328940	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3825441	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4885286	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6562886	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6562887	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7330729	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7983831	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7991823	0.97[ASN][1000 genomes]
rs7992747	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7998651	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9565157	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573529	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573531	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573532	1.00[ASN][1000 genomes]
rs9573533	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498067	chr13:75178898-76012362	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:75902600-75947000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr13:75910800-75947600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr13:75929600-75947600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:75932400-75944400	Weak transcription	Spleen	Spleen
5	chr13:75933000-75943000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:75934800-75947200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr13:75936600-75942600	Weak transcription	Fetal Stomach	stomach
8	chr13:75936600-75942800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr13:75936600-75943000	Weak transcription	Ovary	ovary
10	chr13:75936600-75947600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:75936600-75947600	Weak transcription	Lung	lung
12	chr13:75937200-75945600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr13:75937800-75945800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr13:75939200-75943800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr13:75939400-75943000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr13:75940400-75942600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr13:75940400-75942800	Enhancers	NHDF-Ad	bronchial
18	chr13:75940400-75943400	Enhancers	HSMM	muscle
19	chr13:75940400-75944400	Weak transcription	K562	blood
20	chr13:75940400-75945200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr13:75940400-75947200	Weak transcription	Fetal Muscle Leg	muscle
22	chr13:75940600-75942800	Weak transcription	Left Ventricle	heart
23	chr13:75940600-75943000	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr13:75940600-75946800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr13:75940600-75947200	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr13:75940800-75942800	Enhancers	GM12878-XiMat	blood
27	chr13:75941000-75942800	Enhancers	Fetal Kidney	kidney
28	chr13:75941200-75942600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr13:75941200-75942800	Weak transcription	Psoas Muscle	Psoas
30	chr13:75941400-75942800	Enhancers	Adipose Nuclei	Adipose
31	chr13:75941400-75942800	Flanking Active TSS	HUVEC	blood vessel
32	chr13:75941400-75944200	Weak transcription	Right Ventricle	heart
33	chr13:75941600-75942600	Enhancers	Brain Anterior Caudate	brain
34	chr13:75941600-75945200	Weak transcription	HepG2	liver
35	chr13:75941600-75946800	Weak transcription	Liver	Liver
36	chr13:75941800-75942800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr13:75941800-75942800	Enhancers	NHEK	skin
38	chr13:75941800-75943000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr13:75941800-75943000	Weak transcription	Right Atrium	heart
40	chr13:75941800-75943000	Enhancers	HMEC	breast
41	chr13:75942000-75942600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr13:75942000-75942600	Enhancers	Stomach Smooth Muscle	stomach
43	chr13:75942000-75942800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
44	chr13:75942000-75942800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr13:75942000-75942800	Enhancers	HSMMtube	muscle
46	chr13:75942000-75949600	Enhancers	Fetal Thymus	thymus
47	chr13:75942200-75942800	Flanking Active TSS	NH-A	brain
48	chr13:75942200-75943000	Enhancers	Colon Smooth Muscle	Colon
49	chr13:75942200-75943000	Enhancers	Fetal Lung	lung
50	chr13:75942200-75943600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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