Variant report

Variant	rs9573532
Chromosome Location	chr13:75946125-75946126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:75936738..75942482-chr13:75944415..75947523,6	K562	blood:
2	chr13:75945808..75948448-chr13:76055633..76058257,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136111	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1156831	0.94[EUR][1000 genomes]
rs1325466	1.00[ASN][1000 genomes]
rs1408930	0.87[ASN][1000 genomes]
rs1821127	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2328940	1.00[ASN][1000 genomes]
rs3825441	0.94[ASN][1000 genomes]
rs6562886	0.94[ASN][1000 genomes]
rs6562887	0.94[ASN][1000 genomes]
rs7330729	1.00[ASN][1000 genomes]
rs7991823	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7992747	1.00[ASN][1000 genomes]
rs7998651	0.97[ASN][1000 genomes]
rs9565154	1.00[ASN][1000 genomes]
rs9565157	1.00[ASN][1000 genomes]
rs9573529	1.00[ASN][1000 genomes]
rs9573531	1.00[ASN][1000 genomes]
rs9573533	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498067	chr13:75178898-76012362	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv2761803	chr13:75943309-76161774	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:75902600-75947000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr13:75910800-75947600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr13:75929600-75947600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:75934800-75947200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr13:75936600-75947600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:75936600-75947600	Weak transcription	Lung	lung
7	chr13:75940400-75947200	Weak transcription	Fetal Muscle Leg	muscle
8	chr13:75940600-75946800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr13:75940600-75947200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr13:75941600-75946800	Weak transcription	Liver	Liver
11	chr13:75942000-75949600	Enhancers	Fetal Thymus	thymus
12	chr13:75942600-75952400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr13:75942800-75947000	Weak transcription	Adipose Nuclei	Adipose
14	chr13:75942800-75947200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr13:75942800-75947200	Enhancers	Fetal Heart	heart
16	chr13:75942800-75947200	Weak transcription	Hela-S3	cervix
17	chr13:75942800-75949000	Weak transcription	GM12878-XiMat	blood
18	chr13:75943000-75947000	Weak transcription	HMEC	breast
19	chr13:75943000-75947200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr13:75943000-75947200	Weak transcription	Fetal Lung	lung
21	chr13:75943000-75947600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr13:75943000-75947600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr13:75943200-75946800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr13:75943600-75946400	Weak transcription	Ovary	ovary
25	chr13:75943600-75947000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr13:75943800-75947000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr13:75943800-75947000	Weak transcription	HUVEC	blood vessel
28	chr13:75944600-75946800	Weak transcription	Osteobl	bone
29	chr13:75944600-75947200	Weak transcription	Spleen	Spleen
30	chr13:75944800-75947200	Weak transcription	Right Atrium	heart
31	chr13:75944800-75947600	Weak transcription	Left Ventricle	heart
32	chr13:75945000-75946400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr13:75945200-75947200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr13:75945400-75946800	Weak transcription	K562	blood
35	chr13:75945600-75946600	Weak transcription	HepG2	liver
36	chr13:75945600-75947000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr13:75945600-75955600	Weak transcription	Right Ventricle	heart
38	chr13:75945800-75946400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr13:75945800-75946800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr13:75945800-75947000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr13:75945800-75947600	Weak transcription	Psoas Muscle	Psoas
42	chr13:75946000-75947000	Weak transcription	HSMM	muscle

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