Variant report
| Variant | rs13264793 |
|---|---|
| Chromosome Location | chr8:85462592-85462593 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1039520 | 0.98[ASN][1000 genomes] |
| rs10504805 | 0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1320769 | 0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1320770 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs13248532 | 0.83[EUR][1000 genomes] |
| rs13250018 | 0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs13271249 | 0.82[EUR][1000 genomes] |
| rs1351223 | 0.84[EUR][1000 genomes] |
| rs1479098 | 0.83[EUR][1000 genomes] |
| rs1503600 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1503601 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1824887 | 0.84[EUR][1000 genomes] |
| rs1847344 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1947960 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1994149 | 0.84[EUR][1000 genomes] |
| rs2046313 | 0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4740015 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4740022 | 0.83[EUR][1000 genomes] |
| rs4740023 | 0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs4740024 | 0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs60533047 | 0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6473552 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6473555 | 0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs711059 | 0.94[ASN][1000 genomes] |
| rs711060 | 0.98[ASN][1000 genomes] |
| rs7820792 | 0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7845599 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831375 | chr8:85272352-85463621 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | esv3481417 | chr8:85279453-86145229 | Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| 3 | esv3481418 | chr8:85279453-86145229 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:85462000-85462600 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
