Variant report

Variant	rs6473555
Chromosome Location	chr8:85461947-85461948
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1021852	1.00[CEU][hapmap]
rs1021853	1.00[CEU][hapmap]
rs1039520	0.89[ASN][1000 genomes]
rs10453097	0.89[EUR][1000 genomes]
rs10504803	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10504805	1.00[CEU][hapmap];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12114244	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1319379	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1320769	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1320770	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13248532	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs13250018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13252091	0.96[CEU][hapmap]
rs13253537	0.90[CEU][hapmap]
rs13256410	0.83[EUR][1000 genomes]
rs13257448	0.85[EUR][1000 genomes]
rs13259587	0.88[EUR][1000 genomes]
rs13261209	0.88[EUR][1000 genomes]
rs13264793	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13265396	0.84[EUR][1000 genomes]
rs13271249	0.92[EUR][1000 genomes]
rs13275430	0.88[EUR][1000 genomes]
rs1351223	1.00[CEU][hapmap]
rs1393990	0.96[CEU][hapmap]
rs1479092	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1479093	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1479094	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1479096	0.96[CEU][hapmap]
rs1479098	0.96[CEU][hapmap]
rs1503600	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1503601	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1503602	0.84[EUR][1000 genomes]
rs1564314	1.00[CEU][hapmap]
rs1566791	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1566792	1.00[CEU][hapmap]
rs1847344	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1947960	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2046313	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2127218	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2169922	1.00[CEU][hapmap]
rs28751114	0.89[EUR][1000 genomes]
rs4739691	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4740014	0.87[EUR][1000 genomes]
rs4740015	0.96[CEU][hapmap]
rs4740016	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4740017	0.88[EUR][1000 genomes]
rs4740018	1.00[CEU][hapmap]
rs4740019	1.00[CEU][hapmap]
rs4740020	0.88[EUR][1000 genomes]
rs4740021	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4740022	0.93[EUR][1000 genomes]
rs4740023	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4740024	0.93[EUR][1000 genomes]
rs60533047	0.93[EUR][1000 genomes]
rs6473553	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6473554	1.00[CEU][hapmap]
rs7011638	1.00[CEU][hapmap]
rs7013087	1.00[CEU][hapmap]
rs711059	0.85[ASN][1000 genomes]
rs711060	0.89[ASN][1000 genomes]
rs7820792	1.00[CEU][hapmap];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7822198	1.00[CEU][hapmap]
rs7822220	1.00[CEU][hapmap]
rs7829180	0.81[EUR][1000 genomes]
rs7845599	0.96[CEU][hapmap]
rs9298424	0.96[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831375	chr8:85272352-85463621	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85461200-85462200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr8:85461400-85462000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr8:85461400-85462000	Enhancers	NH-A	brain
4	chr8:85461600-85462000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:85461600-85462200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr8:85461600-85462200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr8:85461600-85462200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:85461800-85462400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links